Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15560

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,530,495	-		BPHYT_RS15555	0.36	-0.5
3,530,552	-		BPHYT_RS15555	0.41	+1.1
3,530,560	+		BPHYT_RS15555	0.41	+0.2
3,530,560	+		BPHYT_RS15555	0.41	-0.2
3,530,560	+		BPHYT_RS15555	0.41	-0.7
3,530,560	+		BPHYT_RS15555	0.41	+0.2
3,530,560	+		BPHYT_RS15555	0.41	+0.3
3,530,560	+		BPHYT_RS15555	0.41	+3.1
3,530,561	-		BPHYT_RS15555	0.41	-0.0
3,530,765	-		BPHYT_RS15555	0.58	+0.8
3,530,824	+		BPHYT_RS15555	0.62	-0.3
3,530,825	-		BPHYT_RS15555	0.62	+0.0
3,530,834	+		BPHYT_RS15555	0.63	+0.4
3,530,870	-		BPHYT_RS15555	0.66	+0.5
3,530,870	-		BPHYT_RS15555	0.66	+0.5
3,530,981	+		BPHYT_RS15555	0.75	-0.2
3,531,287	+				+0.6
3,531,287	+				+0.2
3,531,287	+				+0.1
3,531,288	-				+0.1
3,531,377	+				+0.3
3,531,377	+				-0.0
3,531,778	+		BPHYT_RS15560	0.54	+0.2
3,531,794	+		BPHYT_RS15560	0.57	-0.9
3,531,794	+		BPHYT_RS15560	0.57	-1.3
3,531,794	+		BPHYT_RS15560	0.57	+0.5
3,531,794	+		BPHYT_RS15560	0.57	-0.7
3,531,794	+		BPHYT_RS15560	0.57	-0.1
3,531,795	-		BPHYT_RS15560	0.57	+1.6
3,531,795	-		BPHYT_RS15560	0.57	+1.1
3,531,797	-		BPHYT_RS15560	0.57	-1.6
3,531,947	+		BPHYT_RS15560	0.78	+0.9
3,531,947	+		BPHYT_RS15560	0.78	+1.4
3,531,947	+		BPHYT_RS15560	0.78	-0.6
3,531,947	+		BPHYT_RS15560	0.78	-1.8
3,531,948	-		BPHYT_RS15560	0.78	-0.0
3,531,948	-		BPHYT_RS15560	0.78	-0.6
3,532,212	+				-1.2
3,532,213	-				+0.1
3,532,224	+				+0.9
3,532,224	+				+1.4
3,532,226	+				+0.2
3,532,245	+				-0.2
3,532,378	+		BPHYT_RS15565	0.57	+0.7
3,532,457	-				-0.5
3,532,592	-				+0.1
3,532,686	+				+4.6
3,532,700	-				-0.7
3,532,821	-		BPHYT_RS15570	0.20	+1.1
3,532,861	+		BPHYT_RS15570	0.24	+0.4
3,532,862	-		BPHYT_RS15570	0.24	+0.2
3,532,862	-		BPHYT_RS15570	0.24	-0.9
3,533,009	+		BPHYT_RS15570	0.38	-0.5
3,533,009	+		BPHYT_RS15570	0.38	+0.5
3,533,010	-		BPHYT_RS15570	0.38	+2.9
3,533,010	-		BPHYT_RS15570	0.38	+1.1