Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15545

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,526,904	-		BPHYT_RS15540	0.52	-2.5
3,527,012	+		BPHYT_RS15540	0.58	+1.1
3,527,012	+		BPHYT_RS15540	0.58	-0.2
3,527,013	-		BPHYT_RS15540	0.58	+0.1
3,527,013	-		BPHYT_RS15540	0.58	-1.0
3,527,014	+		BPHYT_RS15540	0.58	-0.0
3,527,077	+		BPHYT_RS15540	0.61	-0.9
3,527,397	-		BPHYT_RS15540	0.78	+0.5
3,527,903	+				+0.2
3,527,909	+				-0.1
3,527,954	+				+0.3
3,527,955	-				-0.9
3,528,079	+		BPHYT_RS15545	0.18	-0.4
3,528,079	+		BPHYT_RS15545	0.18	-1.7
3,528,080	-		BPHYT_RS15545	0.18	-0.5
3,528,089	+		BPHYT_RS15545	0.19	-1.1
3,528,908	+				-1.1
3,529,765	+		BPHYT_RS15550	0.89	+0.4
3,529,766	-		BPHYT_RS15550	0.89	-0.7
3,529,766	-		BPHYT_RS15550	0.89	-2.6