Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15485

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,512,802	-				-3.3
3,512,889	-				+0.1
3,512,889	-				+3.9
3,512,900	-				+0.6
3,512,915	-				+0.2
3,512,968	-		BPHYT_RS15480	0.18	+1.1
3,512,976	+		BPHYT_RS15480	0.19	-0.3
3,513,031	+		BPHYT_RS15480	0.28	+1.0
3,513,031	+		BPHYT_RS15480	0.28	+2.1
3,513,031	+		BPHYT_RS15480	0.28	+0.6
3,513,032	-		BPHYT_RS15480	0.28	+0.8
3,513,032	-		BPHYT_RS15480	0.28	-0.2
3,513,112	-		BPHYT_RS15480	0.42	+0.3
3,513,277	-		BPHYT_RS15480	0.70	-1.4
3,513,397	+		BPHYT_RS15480	0.90	-0.4
3,513,492	+				-2.3
3,513,493	-				-0.9
3,513,567	+				+1.9
3,513,567	+				-0.5
3,513,567	+				-2.7
3,513,812	-		BPHYT_RS15485	0.79	-0.9
3,513,938	+				-0.5
3,513,980	+				+1.7
3,514,173	-				+2.6
3,514,195	+				+0.3
3,514,195	+				+1.1
3,514,195	+				+0.1
3,514,195	+				-0.5
3,514,196	-				+1.1
3,514,196	-				-0.9
3,514,196	-				+2.1
3,514,251	+				+1.1
3,514,299	-		BPHYT_RS15490	0.12	+1.6
3,514,565	+		BPHYT_RS15490	0.32	+1.1
3,514,775	+		BPHYT_RS15490	0.47	+1.1
3,514,775	+		BPHYT_RS15490	0.47	+1.1
3,514,865	+		BPHYT_RS15490	0.53	-1.7