Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15345

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,484,551	+				+1.8
3,484,551	+				-0.2
3,484,552	-				-0.2
3,484,552	-				+1.3
3,484,552	-				+0.2
3,484,560	-				-0.6
3,484,579	+				+1.2
3,484,580	-				+1.0
3,484,583	+				+0.4
3,484,583	+				+0.6
3,484,584	-				-0.3
3,484,584	-				+1.0
3,484,584	-				-0.2
3,484,617	-				+0.0
3,484,641	+				-2.4
3,484,641	+				-0.2
3,484,642	-				+1.3
3,484,643	+				+0.2
3,484,643	+				-0.4
3,484,643	+				-0.6
3,484,644	-				-0.5
3,484,644	-				-0.5
3,484,679	-				-1.6
3,484,683	+				+0.9
3,484,885	+				-1.8
3,484,885	+				-0.4
3,484,886	-				+0.8
3,484,923	-				+0.4
3,484,980	-				+0.1
3,484,996	+				-1.0
3,484,999	+				-0.5
3,485,036	+				+1.1
3,485,055	+				-0.6
3,485,105	+				-3.4
3,485,120	+				+0.3
3,485,174	-				+0.8
3,485,174	-				+0.3
3,485,182	-				+0.6
3,485,254	+				-1.2
3,485,255	-				+0.2
3,485,284	-				-2.8
3,485,352	+				+0.8
3,485,352	+				+0.1
3,485,352	+				-0.2
3,485,352	+				+0.5
3,485,352	+				-1.6
3,485,352	+				-1.1
3,485,357	-				+1.2
3,485,420	+				-0.0
3,485,421	-				+3.4
3,485,433	+				+1.3
3,485,433	+				-0.4
3,485,434	-				+1.3
3,485,453	-		BPHYT_RS15345	0.11	+0.4
3,485,453	-		BPHYT_RS15345	0.11	-1.9
3,485,459	-		BPHYT_RS15345	0.13	-0.4
3,485,512	+		BPHYT_RS15345	0.30	+0.2
3,485,513	-		BPHYT_RS15345	0.30	+0.1
3,485,513	-		BPHYT_RS15345	0.30	+0.9
3,485,513	-		BPHYT_RS15345	0.30	+3.4
3,485,535	+		BPHYT_RS15345	0.38	+0.0
3,485,624	+		BPHYT_RS15345	0.66	-0.1
3,485,625	-		BPHYT_RS15345	0.67	-0.6
3,485,650	-		BPHYT_RS15345	0.75	-0.6
3,485,769	+				-0.8
3,485,845	+				-0.1
3,485,845	+				-0.4
3,485,845	+				+0.7
3,485,846	-				-1.9
3,485,846	-				-0.6
3,485,846	-				-0.6
3,485,846	-				+0.8
3,485,867	+				+0.4
3,485,867	+				-1.0
3,485,868	-				+0.0
3,485,905	+				+3.2
3,485,958	-				+1.1
3,486,054	-				-0.8
3,486,054	-				+0.9
3,486,054	-				+1.1
3,486,272	+				+0.7
3,486,272	+				+0.2
3,486,273	-				+1.7
3,486,297	+				-0.9
3,486,298	-				+1.4
3,486,298	-				+0.2
3,486,352	-				-1.2
3,486,402	+				-1.3
3,486,403	-				-0.1
3,486,418	-				-1.0
3,486,418	-				-0.0
3,486,447	-				+0.3
3,486,447	-				+0.3
3,486,605	-				-1.4
3,486,625	+				+1.0
3,486,626	-				-0.7
3,486,626	-				+2.0
3,486,626	-				+0.9
3,486,626	-				-0.1
3,486,718	+		BPHYT_RS15350	0.24	-0.6
3,486,719	-		BPHYT_RS15350	0.24	+1.6
3,486,719	-		BPHYT_RS15350	0.24	+1.0
3,486,723	-		BPHYT_RS15350	0.24	+0.7