Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15245

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,467,042	-		BPHYT_RS15240	0.73	+0.3
3,467,042	-		BPHYT_RS15240	0.73	+1.4
3,467,190	-		BPHYT_RS15240	0.79	+1.1
3,467,190	-		BPHYT_RS15240	0.79	-0.7
3,467,242	+		BPHYT_RS15240	0.81	+0.2
3,467,390	-		BPHYT_RS15240	0.86	+0.0
3,467,489	+		BPHYT_RS15240	0.90	-0.5
3,467,490	-		BPHYT_RS15240	0.90	-1.3
3,467,490	-		BPHYT_RS15240	0.90	+1.1
3,467,490	-		BPHYT_RS15240	0.90	-0.0
3,467,491	+		BPHYT_RS15240	0.90	+0.5
3,467,491	+		BPHYT_RS15240	0.90	+0.2
3,467,491	+		BPHYT_RS15240	0.90	-2.3
3,467,491	+		BPHYT_RS15240	0.90	-1.0
3,467,491	-		BPHYT_RS15240	0.90	+1.0
3,467,492	-				-0.5
3,467,492	-				-1.0
3,467,492	-				+0.7
3,467,492	-				+0.2
3,467,492	-				-1.4
3,467,492	-				-1.1
3,467,492	-				+0.2
3,467,492	-				-0.6
3,467,493	+				+0.5
3,467,493	+				+1.1
3,467,581	-				-0.4
3,467,735	-				+0.1
3,467,805	+				-1.0
3,467,806	-				-0.6
3,467,829	-				-0.4
3,467,829	-				-0.2
3,469,026	+				+1.0
3,469,078	-				-1.6
3,469,083	+				-0.2
3,469,132	-				+0.3
3,469,297	-				-0.0
3,469,326	+				+0.4
3,469,326	+				-0.1
3,469,407	-				+2.0
3,469,438	-				+0.2
3,469,438	-				-0.9
3,469,443	+				-1.0
3,469,444	-				-1.8
3,469,504	+				+0.2
3,469,521	+				-1.3
3,469,521	+				-0.6
3,469,521	+				+0.9
3,469,521	+				+0.4
3,469,521	+				-0.6
3,469,521	+				+2.8
3,469,567	+				+1.0
3,469,567	+				+1.0