Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15000

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,410,129	+		BPHYT_RS14995	0.68	-0.8
3,410,130	-		BPHYT_RS14995	0.68	-3.7
3,410,130	-		BPHYT_RS14995	0.68	-1.3
3,410,246	+		BPHYT_RS14995	0.72	-2.4
3,410,247	-		BPHYT_RS14995	0.72	-2.1
3,410,247	-		BPHYT_RS14995	0.72	-0.2
3,410,247	-		BPHYT_RS14995	0.72	-3.0
3,410,247	-		BPHYT_RS14995	0.72	+0.0
3,410,293	+		BPHYT_RS14995	0.73	-0.5
3,410,294	-		BPHYT_RS14995	0.73	+0.3
3,410,414	+		BPHYT_RS14995	0.77	-2.1
3,410,675	+		BPHYT_RS14995	0.86	-1.7
3,410,914	+				-3.2
3,410,967	+				-2.8
3,410,968	-				+1.0
3,410,968	-				-2.3
3,411,338	-				+0.8
3,411,650	+				-2.2
3,411,651	-				-1.8
3,411,651	-				-0.2
3,411,671	+				+0.2
3,411,671	+				+0.5
3,411,672	-				-0.1
3,411,672	-				+0.8
3,411,672	-				+0.1
3,411,696	-				-2.0
3,411,696	-				-0.9
3,412,226	+		BPHYT_RS15005	0.40	-0.1