Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14835

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,373,668	+				-0.2
3,373,668	+				+0.2
3,373,668	+				+0.5
3,373,669	-				-2.6
3,373,669	-				-0.3
3,373,967	+		BPHYT_RS14830	0.24	+0.2
3,373,967	+		BPHYT_RS14830	0.24	+0.1
3,373,968	-		BPHYT_RS14830	0.24	-0.8
3,374,323	+		BPHYT_RS14830	0.68	-0.2
3,374,324	-		BPHYT_RS14830	0.68	+0.3
3,374,327	-		BPHYT_RS14830	0.68	+1.3
3,374,406	+		BPHYT_RS14830	0.78	+0.8
3,374,407	-		BPHYT_RS14830	0.78	-0.6
3,374,448	+		BPHYT_RS14830	0.83	-0.5
3,374,448	+		BPHYT_RS14830	0.83	-0.2
3,374,449	-		BPHYT_RS14830	0.83	+0.6
3,374,449	-		BPHYT_RS14830	0.83	+1.3
3,374,593	+				+0.2
3,374,691	-				-1.6
3,374,696	-				-0.5
3,374,696	-				+1.0
3,374,696	-				-0.3
3,374,757	+		BPHYT_RS14835	0.11	+0.1
3,374,799	+		BPHYT_RS14835	0.15	-1.4
3,374,821	+		BPHYT_RS14835	0.18	-1.3
3,374,822	-		BPHYT_RS14835	0.18	-0.8
3,374,822	-		BPHYT_RS14835	0.18	-1.6
3,375,163	+		BPHYT_RS14835	0.55	-1.2
3,375,163	+		BPHYT_RS14835	0.55	+2.7
3,375,164	-		BPHYT_RS14835	0.55	+0.5
3,375,244	-		BPHYT_RS14835	0.64	-0.9
3,375,379	+		BPHYT_RS14835	0.78	+0.0
3,375,381	+		BPHYT_RS14835	0.78	-1.5
3,375,381	+		BPHYT_RS14835	0.78	+0.2
3,375,565	-				+1.1
3,375,673	+				+4.9
3,375,673	+				+0.6
3,375,674	-				+0.0
3,375,792	+				-0.1
3,375,793	-				+0.0
3,375,793	-				-1.3
3,376,105	+		BPHYT_RS14840	0.20	-0.7
3,376,106	-		BPHYT_RS14840	0.20	+0.4
3,376,172	-		BPHYT_RS14840	0.26	-1.4
3,376,256	-		BPHYT_RS14840	0.33	-0.3
3,376,316	-		BPHYT_RS14840	0.38	+0.1
3,376,316	-		BPHYT_RS14840	0.38	+1.0
3,376,436	-		BPHYT_RS14840	0.49	-2.4
3,376,436	-		BPHYT_RS14840	0.49	-0.3
3,376,436	-		BPHYT_RS14840	0.49	+0.5
3,376,436	-		BPHYT_RS14840	0.49	-1.2
3,376,540	+		BPHYT_RS14840	0.58	+0.6
3,376,541	-		BPHYT_RS14840	0.58	-1.6
3,376,552	+		BPHYT_RS14840	0.59	+0.1