Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14715

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,351,377	+				-1.3
3,351,467	+				-0.2
3,351,467	+				-1.0
3,351,467	+				-2.6
3,351,467	+				-0.0
3,351,467	+				-1.3
3,351,468	-				+0.9
3,351,567	+				-0.4
3,351,567	+				-0.9
3,351,567	+				+0.4
3,351,568	-				+1.1
3,351,575	+				+0.5
3,351,575	+				+0.3
3,351,633	+				+1.0
3,351,714	+				-0.8
3,351,715	-				+0.5
3,351,972	+		BPHYT_RS14710	0.40	+1.2
3,351,973	-		BPHYT_RS14710	0.40	-2.6
3,351,973	-		BPHYT_RS14710	0.40	+1.0
3,352,041	+		BPHYT_RS14710	0.51	-0.1
3,352,042	-		BPHYT_RS14710	0.51	-3.2
3,352,042	-		BPHYT_RS14710	0.51	-1.6
3,352,414	+				-1.0
3,352,869	+		BPHYT_RS14715	0.84	-2.0
3,352,869	+		BPHYT_RS14715	0.84	-4.7
3,352,870	-		BPHYT_RS14715	0.84	-2.3
3,352,891	+		BPHYT_RS14715	0.87	-4.0
3,352,892	-		BPHYT_RS14715	0.88	-3.9
3,352,892	-		BPHYT_RS14715	0.88	-3.5
3,352,892	-		BPHYT_RS14715	0.88	-3.7
3,352,892	-		BPHYT_RS14715	0.88	-1.6
3,353,692	-				+0.2
3,353,692	-				-1.7
3,353,692	-				-1.6
3,353,704	+				-0.0
3,353,704	+				-0.2
3,353,708	+				-0.3
3,353,708	+				-1.9
3,353,730	+				-1.2
3,353,730	+				-0.6