Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14690

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,345,401	+		BPHYT_RS14685	0.24	-0.2
3,345,722	-		BPHYT_RS14685	0.63	-2.1
3,345,919	+		BPHYT_RS14685	0.87	+0.1
3,345,920	-		BPHYT_RS14685	0.87	+0.1
3,345,993	+				-2.0
3,346,065	+				-0.2
3,346,065	+				+0.2
3,346,066	-				-0.0
3,346,066	-				+1.4
3,346,263	+				+0.8
3,346,263	+				+0.5
3,346,263	+				+0.4
3,346,511	-		BPHYT_RS14690	0.27	-0.6
3,346,699	+		BPHYT_RS14690	0.40	+0.7
3,346,699	+		BPHYT_RS14690	0.40	+0.3
3,346,699	+		BPHYT_RS14690	0.40	-0.2
3,346,700	-		BPHYT_RS14690	0.40	+1.0
3,346,700	-		BPHYT_RS14690	0.40	-0.1
3,346,703	-		BPHYT_RS14690	0.40	-1.2
3,346,703	-		BPHYT_RS14690	0.40	-0.3
3,346,861	+		BPHYT_RS14690	0.51	+1.3
3,346,862	-		BPHYT_RS14690	0.51	-0.7
3,346,862	-		BPHYT_RS14690	0.51	+0.3
3,346,862	-				+2.0
3,346,862	-		BPHYT_RS14690	0.51	+1.7
3,346,862	-		BPHYT_RS14690	0.51	+0.5
3,346,868	-		BPHYT_RS14690	0.51	-1.0
3,346,876	-		BPHYT_RS14690	0.52	-0.5
3,346,972	+		BPHYT_RS14690	0.59	+0.2
3,346,972	+		BPHYT_RS14690	0.59	-2.2
3,346,972	+		BPHYT_RS14690	0.59	-0.0
3,346,972	+		BPHYT_RS14690	0.59	+0.7
3,346,973	-		BPHYT_RS14690	0.59	-0.6
3,346,973	-		BPHYT_RS14690	0.59	+0.1
3,346,973	-		BPHYT_RS14690	0.59	-3.4
3,346,973	-		BPHYT_RS14690	0.59	+0.7
3,346,975	+		BPHYT_RS14690	0.59	+0.3
3,347,174	-		BPHYT_RS14690	0.73	-0.2
3,347,209	-		BPHYT_RS14690	0.75	+0.7
3,347,209	-		BPHYT_RS14690	0.75	+2.0
3,347,212	+		BPHYT_RS14690	0.75	+1.4
3,347,212	+		BPHYT_RS14690	0.75	+0.5
3,347,213	-		BPHYT_RS14690	0.75	-0.0
3,347,213	-		BPHYT_RS14690	0.75	-0.7
3,347,213	-		BPHYT_RS14690	0.75	+0.5
3,347,213	-		BPHYT_RS14690	0.75	-0.2
3,347,238	+		BPHYT_RS14690	0.77	-0.1
3,347,555	-				-0.6
3,347,797	+		BPHYT_RS14695	0.13	+0.7
3,347,798	-		BPHYT_RS14695	0.13	+0.4
3,348,061	+		BPHYT_RS14695	0.30	+1.4
3,348,062	-		BPHYT_RS14695	0.30	+1.3
3,348,062	-		BPHYT_RS14695	0.30	+0.7
3,348,109	+		BPHYT_RS14695	0.33	-0.8
3,348,410	-		BPHYT_RS14695	0.52	+0.1