Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14660

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,340,321	+		BPHYT_RS14655	0.74	+0.2
3,340,321	+		BPHYT_RS14655	0.74	+1.2
3,340,322	-		BPHYT_RS14655	0.74	+0.0
3,340,361	-		BPHYT_RS14655	0.77	-1.1
3,340,375	+		BPHYT_RS14655	0.78	+0.6
3,340,514	+		BPHYT_RS14655	0.88	-0.6
3,340,623	-				+1.3
3,340,655	-				-0.2
3,340,683	+				-0.0
3,340,684	-				+0.2
3,340,710	+				-1.6
3,340,771	-				+1.1
3,340,893	+				+0.8
3,340,899	-				+2.0
3,341,037	-				-0.6
3,341,063	+				-0.3
3,341,621	-		BPHYT_RS14660	0.81	+0.4
3,341,650	+		BPHYT_RS14660	0.87	+1.6
3,341,701	-				-1.3
3,341,788	+				+0.3
3,341,788	+				+0.1
3,341,788	+				+1.6
3,341,788	+				+0.7
3,341,788	+				+1.0
3,341,789	-				-0.0
3,341,789	-				+1.4
3,341,789	-				+0.6
3,342,258	+		BPHYT_RS14665	0.86	+0.5
3,342,258	+		BPHYT_RS14665	0.86	-1.4
3,342,259	-		BPHYT_RS14665	0.86	-0.5