Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14495

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS14490 and BPHYT_RS14495 are separated by 10 nucleotidesBPHYT_RS14495 and BPHYT_RS14500 are separated by 80 nucleotides BPHYT_RS14490: BPHYT_RS14490 - molybdenum cofactor biosynthesis protein MoeA, at 3,304,770 to 3,305,879 _RS14490 BPHYT_RS14495: BPHYT_RS14495 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 3,305,890 to 3,306,504 _RS14495 BPHYT_RS14500: BPHYT_RS14500 - molybdenum cofactor biosynthesis protein MoaA, at 3,306,585 to 3,307,886 _RS14500 Position (kb) 3305 3306 3307Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 3304.926 kb on + strand, within BPHYT_RS14490at 3304.959 kb on + strand, within BPHYT_RS14490at 3304.959 kb on + strand, within BPHYT_RS14490at 3304.959 kb on + strand, within BPHYT_RS14490at 3304.959 kb on + strand, within BPHYT_RS14490at 3305.072 kb on - strand, within BPHYT_RS14490at 3305.072 kb on - strand, within BPHYT_RS14490at 3305.251 kb on + strand, within BPHYT_RS14490at 3305.252 kb on - strand, within BPHYT_RS14490at 3305.439 kb on + strand, within BPHYT_RS14490at 3305.440 kb on - strand, within BPHYT_RS14490at 3305.440 kb on - strand, within BPHYT_RS14490at 3305.440 kb on - strand, within BPHYT_RS14490at 3305.580 kb on + strand, within BPHYT_RS14490at 3305.580 kb on + strand, within BPHYT_RS14490at 3305.580 kb on + strand, within BPHYT_RS14490at 3305.580 kb on + strand, within BPHYT_RS14490at 3305.580 kb on + strand, within BPHYT_RS14490at 3305.581 kb on - strand, within BPHYT_RS14490at 3305.609 kb on - strand, within BPHYT_RS14490at 3305.679 kb on + strand, within BPHYT_RS14490at 3305.679 kb on + strand, within BPHYT_RS14490at 3305.679 kb on + strand, within BPHYT_RS14490at 3305.679 kb on + strand, within BPHYT_RS14490at 3305.680 kb on - strand, within BPHYT_RS14490at 3305.680 kb on - strand, within BPHYT_RS14490at 3305.680 kb on - strand, within BPHYT_RS14490at 3305.913 kb on + strandat 3306.073 kb on + strand, within BPHYT_RS14495at 3306.073 kb on + strand, within BPHYT_RS14495at 3306.074 kb on - strand, within BPHYT_RS14495at 3306.074 kb on - strand, within BPHYT_RS14495at 3306.103 kb on - strand, within BPHYT_RS14495at 3306.122 kb on + strand, within BPHYT_RS14495at 3306.184 kb on + strand, within BPHYT_RS14495at 3306.184 kb on + strand, within BPHYT_RS14495at 3306.457 kb on + strandat 3306.457 kb on + strandat 3306.474 kb on - strandat 3306.625 kb on - strandat 3306.625 kb on - strandat 3306.640 kb on + strandat 3306.641 kb on - strandat 3307.239 kb on + strand, within BPHYT_RS14500at 3307.239 kb on + strand, within BPHYT_RS14500

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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3,304,926 + BPHYT_RS14490 0.14 -2.6
3,304,959 + BPHYT_RS14490 0.17 -4.1
3,304,959 + BPHYT_RS14490 0.17 -4.1
3,304,959 + BPHYT_RS14490 0.17 -1.8
3,304,959 + BPHYT_RS14490 0.17 -0.5
3,305,072 - BPHYT_RS14490 0.27 +2.7
3,305,072 - BPHYT_RS14490 0.27 +1.0
3,305,251 + BPHYT_RS14490 0.43 -1.0
3,305,252 - BPHYT_RS14490 0.43 -4.0
3,305,439 + BPHYT_RS14490 0.60 -2.6
3,305,440 - BPHYT_RS14490 0.60 -2.1
3,305,440 - BPHYT_RS14490 0.60 -2.9
3,305,440 - BPHYT_RS14490 0.60 -3.0
3,305,580 + BPHYT_RS14490 0.73 -0.8
3,305,580 + BPHYT_RS14490 0.73 -6.1
3,305,580 + BPHYT_RS14490 0.73 -3.5
3,305,580 + BPHYT_RS14490 0.73 -3.8
3,305,580 + BPHYT_RS14490 0.73 -4.7
3,305,581 - BPHYT_RS14490 0.73 -2.9
3,305,609 - BPHYT_RS14490 0.76 +0.1
3,305,679 + BPHYT_RS14490 0.82 -4.2
3,305,679 + BPHYT_RS14490 0.82 -2.9
3,305,679 + BPHYT_RS14490 0.82 -4.1
3,305,679 + BPHYT_RS14490 0.82 -2.8
3,305,680 - BPHYT_RS14490 0.82 -2.8
3,305,680 - BPHYT_RS14490 0.82 -2.7
3,305,680 - BPHYT_RS14490 0.82 -5.3
3,305,913 + -0.0
3,306,073 + BPHYT_RS14495 0.30 -2.8
3,306,073 + BPHYT_RS14495 0.30 -2.8
3,306,074 - BPHYT_RS14495 0.30 -2.4
3,306,074 - BPHYT_RS14495 0.30 -2.0
3,306,103 - BPHYT_RS14495 0.35 -1.3
3,306,122 + BPHYT_RS14495 0.38 -2.1
3,306,184 + BPHYT_RS14495 0.48 -3.5
3,306,184 + BPHYT_RS14495 0.48 -0.0
3,306,457 + -1.6
3,306,457 + -2.2
3,306,474 - -2.7
3,306,625 - -3.8
3,306,625 - -2.6
3,306,640 + -0.5
3,306,641 - -1.3
3,307,239 + BPHYT_RS14500 0.50 -2.0
3,307,239 + BPHYT_RS14500 0.50 +0.2

Or see this region's nucleotide sequence