Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14265

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,259,756	-		BPHYT_RS14260	0.36	-0.1
3,260,224	+		BPHYT_RS14260	0.68	+0.2
3,260,225	-		BPHYT_RS14260	0.68	+0.1
3,260,295	+		BPHYT_RS14260	0.73	+0.6
3,260,295	+		BPHYT_RS14260	0.73	+0.4
3,260,295	+		BPHYT_RS14260	0.73	+0.1
3,260,295	+		BPHYT_RS14260	0.73	-1.1
3,260,397	+		BPHYT_RS14260	0.80	-0.3
3,260,397	+		BPHYT_RS14260	0.80	-0.6
3,260,397	+		BPHYT_RS14260	0.80	-0.1
3,260,447	-		BPHYT_RS14260	0.83	-0.8
3,260,460	+		BPHYT_RS14260	0.84	+0.3
3,260,463	+		BPHYT_RS14260	0.84	+0.6
3,260,463	+		BPHYT_RS14260	0.84	+2.6
3,260,463	+		BPHYT_RS14260	0.84	+0.3
3,260,464	-		BPHYT_RS14260	0.84	-0.8
3,260,464	-		BPHYT_RS14260	0.84	+1.0
3,260,464	-		BPHYT_RS14260	0.84	+0.7
3,260,608	-				+0.3
3,260,714	+				-0.4
3,260,715	-				+0.6
3,260,819	+				-3.9
3,260,819	+				-4.0
3,261,192	+		BPHYT_RS14265	0.59	+0.0
3,261,578	+				+0.0
3,261,578	+				-0.4
3,261,579	-				-0.1
3,261,579	-				+0.2
3,261,579	-				+0.1
3,261,579	-				-0.2
3,261,774	-				-0.0
3,261,781	+				-0.2
3,261,782	-				-0.4
3,261,792	+				-0.1
3,261,792	+				+0.7
3,261,793	-				+0.1
3,261,793	-				+1.2
3,261,793	-				+3.3
3,261,793	-				+0.0
3,261,793	-				-1.9
3,261,793	-				+0.0
3,261,793	-				+0.8
3,262,113	-		BPHYT_RS14270	0.34	+0.1
3,262,122	-		BPHYT_RS14270	0.35	-1.6
3,262,265	+		BPHYT_RS14270	0.59	+1.7
3,262,265	+		BPHYT_RS14270	0.59	+1.8
3,262,265	+		BPHYT_RS14270	0.59	-0.0
3,262,266	-		BPHYT_RS14270	0.59	+0.1
3,262,266	-		BPHYT_RS14270	0.59	-0.6
3,262,388	+		BPHYT_RS14270	0.79	+1.0
3,262,389	-		BPHYT_RS14270	0.79	+0.1
3,262,402	+		BPHYT_RS14270	0.81	+0.5
3,262,402	+		BPHYT_RS14270	0.81	+0.1
3,262,402	+		BPHYT_RS14270	0.81	-0.3
3,262,415	+		BPHYT_RS14270	0.83	+0.8
3,262,416	-		BPHYT_RS14270	0.83	+0.9