Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14185

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,238,103	+		BPHYT_RS14175	0.45	-0.4
3,238,104	-		BPHYT_RS14175	0.45	-0.3
3,238,390	-				+0.6
3,238,502	+				-2.1
3,238,503	-				+0.0
3,238,649	+		BPHYT_RS14180	0.22	+0.2
3,238,695	-		BPHYT_RS14180	0.31	+0.5
3,238,753	-		BPHYT_RS14180	0.42	-1.1
3,238,983	-		BPHYT_RS14180	0.87	-1.8
3,239,074	+				-1.6
3,239,074	+				+0.1
3,239,075	-				-0.9
3,239,095	+				+0.0
3,239,231	-		BPHYT_RS14185	0.34	-3.5
3,239,544	-				-2.2
3,239,554	-				-0.6
3,239,554	-				-0.7
3,239,590	-				+0.4
3,239,657	-				+0.2
3,239,669	+				-0.6
3,239,670	-				+2.0
3,239,670	-				-0.2
3,239,696	+				-0.6
3,239,722	+				-1.2
3,239,796	-				-1.0
3,239,798	+				+1.0
3,239,799	-				+0.0
3,239,799	-				+1.0
3,239,939	-				+0.4
3,240,260	+		BPHYT_RS14190	0.17	+0.0
3,240,261	-		BPHYT_RS14190	0.17	+1.0
3,240,261	-		BPHYT_RS14190	0.17	-1.3
3,240,365	+		BPHYT_RS14190	0.21	-1.0
3,240,366	-		BPHYT_RS14190	0.21	-1.0
3,240,366	-		BPHYT_RS14190	0.21	+1.0
3,240,366	-		BPHYT_RS14190	0.21	+1.0
3,240,407	+		BPHYT_RS14190	0.22	-0.6