Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14095

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,217,307	-				+0.1
3,217,307	-				+0.1
3,217,434	-				+0.4
3,217,452	+				-0.2
3,217,452	+				-1.6
3,217,453	-				-0.2
3,217,502	-				-1.0
3,217,549	+		BPHYT_RS14085	0.10	+0.3
3,217,549	+		BPHYT_RS14085	0.10	+0.8
3,217,550	-		BPHYT_RS14085	0.11	-0.6
3,217,550	-		BPHYT_RS14085	0.11	-0.0
3,217,550	-		BPHYT_RS14085	0.11	+0.5
3,217,550	-		BPHYT_RS14085	0.11	-1.3
3,217,556	+		BPHYT_RS14085	0.14	-2.1
3,217,556	+		BPHYT_RS14085	0.14	-0.3
3,217,556	+		BPHYT_RS14085	0.14	-0.2
3,217,602	+		BPHYT_RS14085	0.43	+0.3
3,217,687	+				-0.2
3,217,687	+				-0.2
3,217,687	+				+0.3
3,217,687	+				+1.0
3,217,687	+				+0.7
3,217,687	+				+0.3
3,217,688	-				-2.3
3,217,688	-				-0.6
3,217,688	-				+1.0
3,217,688	-				-0.3
3,217,689	+				-0.3
3,217,689	+				+0.7
3,217,689	+				+0.7
3,217,690	-				+0.3
3,217,768	+				-0.1
3,217,768	+				-0.7
3,217,768	+				-1.6
3,217,966	+				+1.1
3,218,364	+		BPHYT_RS14095	0.58	+1.6
3,218,364	+		BPHYT_RS14095	0.58	+0.2
3,218,443	-		BPHYT_RS14095	0.75	+0.3
3,218,626	+				+1.3
3,218,687	+				+0.4
3,218,688	-				-0.9
3,218,758	+				-0.6
3,218,759	-				-1.6
3,218,833	+				-0.2
3,218,834	-				+0.0
3,218,836	+				+1.0
3,218,836	+				+1.0
3,218,836	+				+0.4
3,218,836	+				+2.3
3,218,837	-				-0.1
3,219,112	+		BPHYT_RS14100	0.28	+1.6
3,219,113	-		BPHYT_RS14100	0.28	+1.2
3,219,166	+		BPHYT_RS14100	0.35	-0.0
3,219,198	+		BPHYT_RS14100	0.39	-0.6
3,219,211	+		BPHYT_RS14100	0.40	+0.2
3,219,211	+		BPHYT_RS14100	0.40	-0.6
3,219,211	+		BPHYT_RS14100	0.40	+0.3
3,219,346	+		BPHYT_RS14100	0.57	+0.4
3,219,346	+		BPHYT_RS14100	0.57	-1.0
3,219,346	+		BPHYT_RS14100	0.57	+1.7
3,219,347	-		BPHYT_RS14100	0.57	-0.1
3,219,365	-		BPHYT_RS14100	0.59	-1.0
3,219,469	+		BPHYT_RS14100	0.72	-0.1
3,219,470	-		BPHYT_RS14100	0.72	-0.6
3,219,486	+		BPHYT_RS14100	0.74	+0.5
3,219,487	-		BPHYT_RS14100	0.74	-0.6
3,219,553	+		BPHYT_RS14100	0.82	-0.6
3,219,554	-		BPHYT_RS14100	0.82	-1.8