Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS13710 and BPHYT_RS13715 are separated by 279 nucleotides BPHYT_RS13715 and BPHYT_RS13720 are separated by 240 nucleotides
BPHYT_RS13710: BPHYT_RS13710 - glycerol acyltransferase, at 3,124,335 to 3,126,272
_RS13710
BPHYT_RS13715: BPHYT_RS13715 - hypothetical protein, at 3,126,552 to 3,127,013
_RS13715
BPHYT_RS13720: BPHYT_RS13720 - O-acetylhomoserine aminocarboxypropyltransferase, at 3,127,254 to 3,128,606
_RS13720
Position (kb) 3126
3127
3128 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3125.824 kb on + strand, within BPHYT_RS13710 at 3125.825 kb on - strand, within BPHYT_RS13710 at 3125.825 kb on - strand, within BPHYT_RS13710 at 3125.825 kb on - strand, within BPHYT_RS13710 at 3125.830 kb on + strand, within BPHYT_RS13710 at 3125.831 kb on - strand, within BPHYT_RS13710 at 3125.884 kb on + strand, within BPHYT_RS13710 at 3126.101 kb on - strand at 3126.599 kb on + strand, within BPHYT_RS13715 at 3126.600 kb on - strand, within BPHYT_RS13715 at 3126.601 kb on + strand, within BPHYT_RS13715 at 3126.601 kb on + strand, within BPHYT_RS13715 at 3126.601 kb on + strand, within BPHYT_RS13715 at 3126.601 kb on + strand, within BPHYT_RS13715 at 3126.602 kb on - strand, within BPHYT_RS13715 at 3126.602 kb on - strand, within BPHYT_RS13715 at 3126.661 kb on + strand, within BPHYT_RS13715 at 3126.661 kb on + strand, within BPHYT_RS13715 at 3126.886 kb on + strand, within BPHYT_RS13715 at 3126.894 kb on + strand, within BPHYT_RS13715 at 3126.993 kb on - strand at 3127.046 kb on - strand at 3127.084 kb on + strand at 3127.085 kb on - strand at 3127.085 kb on - strand at 3127.199 kb on - strand at 3127.199 kb on - strand at 3127.346 kb on + strand at 3127.346 kb on + strand at 3127.347 kb on - strand at 3127.347 kb on - strand at 3127.394 kb on + strand, within BPHYT_RS13720 at 3127.395 kb on - strand, within BPHYT_RS13720 at 3127.416 kb on + strand, within BPHYT_RS13720 at 3127.416 kb on + strand, within BPHYT_RS13720 at 3127.417 kb on - strand, within BPHYT_RS13720 at 3127.559 kb on + strand, within BPHYT_RS13720 at 3127.581 kb on + strand, within BPHYT_RS13720 at 3127.608 kb on + strand, within BPHYT_RS13720 at 3127.858 kb on - strand, within BPHYT_RS13720 at 3127.974 kb on + strand, within BPHYT_RS13720 at 3127.974 kb on + strand, within BPHYT_RS13720
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 3,125,824 + BPHYT_RS13710 0.77 +0.3 3,125,825 - BPHYT_RS13710 0.77 +0.5 3,125,825 - BPHYT_RS13710 0.77 +2.9 3,125,825 - BPHYT_RS13710 0.77 +0.3 3,125,830 + BPHYT_RS13710 0.77 -1.3 3,125,831 - BPHYT_RS13710 0.77 +0.5 3,125,884 + BPHYT_RS13710 0.80 +0.6 3,126,101 - -1.9 3,126,599 + BPHYT_RS13715 0.10 -3.2 3,126,600 - BPHYT_RS13715 0.10 -1.3 3,126,601 + BPHYT_RS13715 0.11 -0.1 3,126,601 + BPHYT_RS13715 0.11 -1.6 3,126,601 + BPHYT_RS13715 0.11 -2.3 3,126,601 + BPHYT_RS13715 0.11 -1.3 3,126,602 - BPHYT_RS13715 0.11 -2.7 3,126,602 - BPHYT_RS13715 0.11 -1.1 3,126,661 + BPHYT_RS13715 0.24 -0.1 3,126,661 + BPHYT_RS13715 0.24 -2.0 3,126,886 + BPHYT_RS13715 0.72 -1.3 3,126,894 + BPHYT_RS13715 0.74 -2.4 3,126,993 - -1.8 3,127,046 - -0.8 3,127,084 + -0.9 3,127,085 - +1.2 3,127,085 - -0.9 3,127,199 - +1.0 3,127,199 - +1.6 3,127,346 + +0.4 3,127,346 + -2.2 3,127,347 - +0.0 3,127,347 - -0.4 3,127,394 + BPHYT_RS13720 0.10 +0.1 3,127,395 - BPHYT_RS13720 0.10 +0.4 3,127,416 + BPHYT_RS13720 0.12 +1.5 3,127,416 + BPHYT_RS13720 0.12 -0.2 3,127,417 - BPHYT_RS13720 0.12 -0.2 3,127,559 + BPHYT_RS13720 0.23 -1.0 3,127,581 + BPHYT_RS13720 0.24 -0.4 3,127,608 + BPHYT_RS13720 0.26 -0.9 3,127,858 - BPHYT_RS13720 0.45 +0.3 3,127,974 + BPHYT_RS13720 0.53 -0.2 3,127,974 + BPHYT_RS13720 0.53 -0.6
Or see this region's nucleotide sequence