Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13645

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,108,735	-				-0.1
3,108,735	-				+0.5
3,108,735	-				+0.7
3,109,557	-				-2.1
3,109,591	-				-1.1
3,109,592	+				+1.0
3,109,593	-				-2.7
3,109,593	-				-1.5
3,109,593	-				-0.8
3,109,597	-				-1.8
3,109,597	-				-0.7
3,109,597	-				+0.0
3,109,597	-				-3.2
3,109,597	-				-0.3
3,109,597	-				-2.3
3,109,597	-				-2.7
3,109,625	-		BPHYT_RS13645	0.11	+0.2
3,109,671	-		BPHYT_RS13645	0.13	-0.9
3,109,872	+		BPHYT_RS13645	0.24	-0.2
3,109,928	+		BPHYT_RS13645	0.27	-3.0
3,109,929	-		BPHYT_RS13645	0.27	-2.5
3,109,929	-		BPHYT_RS13645	0.27	-2.8
3,109,929	-		BPHYT_RS13645	0.27	-3.3
3,109,946	+		BPHYT_RS13645	0.28	-1.0
3,110,108	+		BPHYT_RS13645	0.36	-1.1
3,110,108	+		BPHYT_RS13645	0.36	-1.4
3,110,108	+		BPHYT_RS13645	0.36	-3.7
3,110,109	-		BPHYT_RS13645	0.36	-2.1
3,110,109	-		BPHYT_RS13645	0.36	-1.7
3,110,109	-		BPHYT_RS13645	0.36	-1.0
3,110,128	-		BPHYT_RS13645	0.37	-2.2
3,110,128	-		BPHYT_RS13645	0.37	-1.9
3,110,176	-		BPHYT_RS13645	0.40	-1.0
3,110,176	-		BPHYT_RS13645	0.40	-1.3
3,110,242	-		BPHYT_RS13645	0.43	-1.2
3,110,268	-		BPHYT_RS13645	0.44	-0.5
3,110,268	-		BPHYT_RS13645	0.44	-1.5
3,110,352	-		BPHYT_RS13645	0.49	-0.2
3,110,462	+		BPHYT_RS13645	0.55	-2.2
3,110,492	+		BPHYT_RS13645	0.56	-2.9
3,110,492	+		BPHYT_RS13645	0.56	-2.1
3,110,493	-		BPHYT_RS13645	0.56	-1.0
3,110,636	+		BPHYT_RS13645	0.64	-1.7
3,110,637	-		BPHYT_RS13645	0.64	-1.5
3,110,637	-		BPHYT_RS13645	0.64	-4.2
3,110,637	-		BPHYT_RS13645	0.64	-0.8
3,110,675	+		BPHYT_RS13645	0.66	-2.8
3,110,675	+		BPHYT_RS13645	0.66	+0.5
3,110,676	-		BPHYT_RS13645	0.66	-2.0
3,110,813	+		BPHYT_RS13645	0.73	-1.9
3,110,813	+		BPHYT_RS13645	0.73	-0.7
3,110,813	+		BPHYT_RS13645	0.73	-3.6
3,110,813	+		BPHYT_RS13645	0.73	-2.3
3,110,814	-		BPHYT_RS13645	0.73	-1.0
3,110,814	-		BPHYT_RS13645	0.73	-0.9
3,110,862	+		BPHYT_RS13645	0.76	-1.0
3,110,864	+		BPHYT_RS13645	0.76	-2.4
3,110,864	+		BPHYT_RS13645	0.76	-3.7
3,110,865	-		BPHYT_RS13645	0.76	-0.9
3,110,865	-		BPHYT_RS13645	0.76	-1.6
3,110,865	-		BPHYT_RS13645	0.76	-3.0
3,110,889	-		BPHYT_RS13645	0.77	-1.9
3,111,006	-		BPHYT_RS13645	0.83	-2.0
3,111,006	-		BPHYT_RS13645	0.83	+0.0
3,111,017	+		BPHYT_RS13645	0.84	-1.3
3,111,017	+		BPHYT_RS13645	0.84	-1.5
3,111,018	-		BPHYT_RS13645	0.84	-2.5
3,111,020	+		BPHYT_RS13645	0.84	-2.5
3,111,020	+		BPHYT_RS13645	0.84	-1.3
3,111,021	-		BPHYT_RS13645	0.84	-0.7
3,111,021	-		BPHYT_RS13645	0.84	-3.3
3,111,086	+		BPHYT_RS13645	0.87	-1.5
3,111,086	+		BPHYT_RS13645	0.87	-2.7
3,111,189	+				-1.2
3,111,288	-				-2.7
3,111,288	-				-0.9
3,111,316	+				-0.3
3,111,316	+				-3.9
3,111,317	-				-0.4
3,111,362	+				-2.1
3,111,362	+				+2.0
3,111,363	-				+0.6
3,111,363	-				-2.7
3,111,363	-				-0.5
3,111,363	-				+1.2
3,111,363	-				-0.6
3,111,363	-				+0.5
3,111,434	+				-2.0
3,111,476	-				-0.1
3,111,509	-				-0.1
3,111,534	+				-0.6
3,111,671	-				-0.1
3,111,671	-				-3.1
3,111,671	-				-2.6
3,111,671	-				-2.2
3,111,698	+				-1.1
3,111,705	-				+0.3
3,111,754	+				+0.0
3,111,754	+				-0.1
3,111,754	+				+0.1
3,111,755	-				-0.7
3,111,839	-				-0.9
3,111,839	-				-1.3
3,111,964	+				-3.0
3,112,017	+		BPHYT_RS13655	0.10	-1.0
3,112,165	+		BPHYT_RS13655	0.17	-1.4
3,112,276	+		BPHYT_RS13655	0.22	+3.0
3,112,277	-		BPHYT_RS13655	0.22	-0.2
3,112,277	-		BPHYT_RS13655	0.22	-0.1