Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13245

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,022,141	+				-1.0
3,022,141	+				+0.4
3,022,471	+				-0.2
3,022,609	+				-0.8
3,023,049	-				-1.3
3,023,113	+		BPHYT_RS13245	0.10	-0.9
3,023,113	+		BPHYT_RS13245	0.10	+1.0
3,023,114	-		BPHYT_RS13245	0.10	-1.3
3,023,114	-		BPHYT_RS13245	0.10	-1.2
3,023,212	+		BPHYT_RS13245	0.18	-2.3
3,023,213	-		BPHYT_RS13245	0.18	-4.2
3,023,213	-		BPHYT_RS13245	0.18	-1.1
3,024,470	+				+0.0
3,024,471	-				-1.5
3,024,566	+				+0.1
3,024,575	-				-0.4
3,024,575	-				+1.4
3,024,683	+				+0.8
3,024,684	-				+0.0
3,024,684	-				-1.6
3,024,688	-				+0.0
3,024,688	-				+0.0
3,024,694	-				-0.4
3,024,694	-				-1.3
3,024,881	-		BPHYT_RS13250	0.44	+0.5
3,024,961	+		BPHYT_RS13250	0.61	-0.3