Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12745

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,907,397	+				-0.4
2,907,397	+				-1.5
2,907,398	-				-0.3
2,907,398	-				-1.4
2,907,400	-				-0.2
2,907,400	-				+0.8
2,907,480	+				+0.3
2,907,860	+		BPHYT_RS12745	0.46	-0.8
2,907,860	+		BPHYT_RS12745	0.46	+0.3
2,907,893	-		BPHYT_RS12745	0.50	-0.4
2,907,893	-		BPHYT_RS12745	0.50	+1.6
2,907,896	+		BPHYT_RS12745	0.51	+0.1
2,907,897	-		BPHYT_RS12745	0.51	-0.8
2,907,897	-		BPHYT_RS12745	0.51	+1.5
2,907,897	-		BPHYT_RS12745	0.51	+2.5
2,907,926	+		BPHYT_RS12745	0.55	+1.5
2,907,927	-		BPHYT_RS12745	0.55	-2.0
2,908,190	+				+2.6
2,908,190	+				+0.9
2,908,190	+				-0.4
2,908,191	-				+0.0
2,908,191	-				-2.0
2,908,191	-				+0.3
2,908,995	-				-1.4
2,909,017	-				-0.4