Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12630

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,881,265	+		BPHYT_RS12625	0.33	-2.3
2,881,265	+		BPHYT_RS12625	0.33	-1.5
2,881,488	-		BPHYT_RS12625	0.51	+0.2
2,881,568	+		BPHYT_RS12625	0.58	-1.4
2,881,568	+		BPHYT_RS12625	0.58	-0.8
2,881,568	+		BPHYT_RS12625	0.58	-0.5
2,881,569	-		BPHYT_RS12625	0.58	-0.1
2,881,649	+		BPHYT_RS12625	0.65	+0.0
2,881,697	+		BPHYT_RS12625	0.69	-0.3
2,881,698	-		BPHYT_RS12625	0.69	-0.8
2,881,714	-		BPHYT_RS12625	0.70	-0.7
2,881,714	-		BPHYT_RS12625	0.70	-0.5
2,881,742	+		BPHYT_RS12625	0.72	-0.6
2,881,922	+		BPHYT_RS12625	0.87	-1.2
2,882,058	+				+0.2
2,882,058	+				-0.5
2,882,059	-				+0.2
2,882,077	+				+0.5
2,882,078	-				+1.7
2,882,756	-				+0.6
2,883,137	-		BPHYT_RS12635	0.55	-0.8
2,883,137	-		BPHYT_RS12635	0.55	+1.8
2,883,313	+		BPHYT_RS12635	0.82	-0.4
2,883,314	-		BPHYT_RS12635	0.82	-1.0
2,883,416	-				+1.0
2,883,416	-				-0.1
2,883,416	-				-0.1
2,883,460	+				+0.3
2,883,460	+				+0.9
2,883,461	-				+0.3
2,883,501	-				+0.3
2,883,695	+		BPHYT_RS12640	0.17	-0.8