Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12475

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,842,631	+		BPHYT_RS12470	0.41	+1.2
2,842,631	+		BPHYT_RS12470	0.41	+0.4
2,842,632	-		BPHYT_RS12470	0.41	+0.1
2,842,728	-		BPHYT_RS12470	0.49	+0.2
2,842,728	-		BPHYT_RS12470	0.49	+1.5
2,843,012	+		BPHYT_RS12470	0.70	-0.2
2,843,012	+		BPHYT_RS12470	0.70	+4.2
2,843,051	-		BPHYT_RS12470	0.73	-0.4
2,843,060	+		BPHYT_RS12470	0.74	-0.3
2,843,060	+		BPHYT_RS12470	0.74	-1.0
2,843,060	+		BPHYT_RS12470	0.74	-3.2
2,843,060	+		BPHYT_RS12470	0.74	-1.4
2,843,061	-		BPHYT_RS12470	0.74	-0.1
2,843,061	-		BPHYT_RS12470	0.74	+0.8
2,843,061	-		BPHYT_RS12470	0.74	-1.0
2,843,075	+		BPHYT_RS12470	0.75	+0.1
2,843,459	+				-2.1
2,843,545	+				+0.4
2,843,613	+				+3.9
2,843,614	-				+0.7
2,843,655	+				+3.2
2,843,674	-				+1.0
2,843,799	+				-0.8
2,843,958	+		BPHYT_RS12475	0.15	-1.1
2,843,958	+		BPHYT_RS12475	0.15	+1.0
2,843,959	-		BPHYT_RS12475	0.15	-1.5
2,844,384	+		BPHYT_RS12475	0.31	+3.2
2,844,385	-		BPHYT_RS12475	0.31	-1.6
2,844,386	+		BPHYT_RS12475	0.31	+2.1
2,844,387	-		BPHYT_RS12475	0.31	+5.0
2,844,713	+		BPHYT_RS12475	0.43	+0.7
2,844,894	+		BPHYT_RS12475	0.50	+0.7
2,845,029	+		BPHYT_RS12475	0.55	+7.5
2,845,029	+		BPHYT_RS12475	0.55	+2.3
2,845,031	+		BPHYT_RS12475	0.55	+1.3
2,845,074	+		BPHYT_RS12475	0.57	-0.4
2,845,110	+		BPHYT_RS12475	0.58	-0.6
2,845,110	+		BPHYT_RS12475	0.58	-0.6
2,845,111	-		BPHYT_RS12475	0.58	+0.8
2,845,509	+		BPHYT_RS12475	0.73	+0.6
2,845,510	-		BPHYT_RS12475	0.73	+2.3
2,845,521	+		BPHYT_RS12475	0.73	+3.4
2,845,521	+		BPHYT_RS12475	0.73	+3.5
2,845,522	-		BPHYT_RS12475	0.73	+0.5
2,845,773	-		BPHYT_RS12475	0.83	-0.6
2,845,777	+		BPHYT_RS12475	0.83	+0.7
2,845,777	+		BPHYT_RS12475	0.83	+0.9
2,846,365	+		BPHYT_RS12480	0.10	+0.8
2,846,383	+				+0.4
2,846,492	-		BPHYT_RS12480	0.20	-1.5
2,846,695	-		BPHYT_RS12480	0.35	+1.0
2,846,695	-		BPHYT_RS12480	0.35	+1.3
2,846,834	-		BPHYT_RS12480	0.45	-1.3
2,847,222	+		BPHYT_RS12480	0.73	-0.3