Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12325

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,813,317	+		BPHYT_RS12320	0.10	-0.6
2,813,318	-		BPHYT_RS12320	0.11	-0.3
2,813,520	+		BPHYT_RS12320	0.33	+3.0
2,813,521	-		BPHYT_RS12320	0.33	+0.4
2,813,712	-		BPHYT_RS12320	0.54	+0.3
2,814,300	+				-1.5
2,814,471	+		BPHYT_RS12325	0.37	+0.5
2,814,471	+		BPHYT_RS12325	0.37	+1.7
2,814,657	+		BPHYT_RS12325	0.77	-1.3
2,814,657	+		BPHYT_RS12325	0.77	+2.5
2,814,840	+				+1.2
2,814,865	+				+1.0
2,815,088	-		BPHYT_RS12335	0.14	-1.0
2,815,165	-				+1.1