Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12205

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,786,880	-		BPHYT_RS12205	0.28	-0.5
2,786,880	-		BPHYT_RS12205	0.28	+0.6
2,787,146	+		BPHYT_RS12205	0.58	+1.0
2,787,147	-		BPHYT_RS12205	0.58	+0.2
2,787,240	-		BPHYT_RS12205	0.69	-3.0
2,787,296	-		BPHYT_RS12205	0.75	+2.0
2,788,048	+				-1.6
2,788,049	-				+0.2
2,788,049	-				-1.5
2,788,066	+		BPHYT_RS12210	0.11	+0.2
2,788,066	+		BPHYT_RS12210	0.11	+1.1
2,788,066	+		BPHYT_RS12210	0.11	-0.4
2,788,305	+		BPHYT_RS12210	0.27	-0.5
2,788,432	+		BPHYT_RS12210	0.36	+1.8
2,788,478	-		BPHYT_RS12210	0.39	+0.7