Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11950

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,716,936	-				+0.1
2,717,037	-		BPHYT_RS11945	0.41	-0.1
2,717,220	-		BPHYT_RS11945	0.59	+3.4
2,717,357	-		BPHYT_RS11945	0.73	-0.4
2,717,454	+		BPHYT_RS11945	0.83	-1.8
2,717,455	-		BPHYT_RS11945	0.83	+1.1
2,717,527	-		BPHYT_RS11945	0.90	+0.1
2,717,529	-				+1.1
2,718,055	+		BPHYT_RS11950	0.14	+1.9
2,718,106	+		BPHYT_RS11950	0.17	+0.2
2,718,315	+		BPHYT_RS11950	0.31	+0.1
2,718,535	-		BPHYT_RS11950	0.45	+1.8
2,718,881	-		BPHYT_RS11950	0.67	+0.6
2,718,882	+		BPHYT_RS11950	0.67	-0.8
2,718,882	+		BPHYT_RS11950	0.67	+0.3
2,718,882	+		BPHYT_RS11950	0.67	-0.5
2,718,882	+		BPHYT_RS11950	0.67	+0.0
2,718,984	+		BPHYT_RS11950	0.74	+1.1
2,719,448	-				-0.7
2,719,658	-		BPHYT_RS11955	0.12	-0.7
2,719,904	+		BPHYT_RS11955	0.31	+0.2