Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11360

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,578,082	+		BPHYT_RS11355	0.46	-0.5
2,578,140	+		BPHYT_RS11355	0.52	+1.2
2,578,168	-		BPHYT_RS11355	0.54	-0.8
2,578,168	-		BPHYT_RS11355	0.54	+2.8
2,578,461	+		BPHYT_RS11355	0.82	+0.4
2,578,462	-		BPHYT_RS11355	0.82	-0.3
2,578,897	-				+0.3
2,579,041	+		BPHYT_RS11360	0.39	-0.8
2,579,190	-				+3.7
2,579,381	+		BPHYT_RS11365	0.31	+0.0
2,579,382	-		BPHYT_RS11365	0.31	+0.0
2,579,382	-		BPHYT_RS11365	0.31	-1.8
2,579,490	+		BPHYT_RS11365	0.49	-1.7
2,579,490	+		BPHYT_RS11365	0.49	-2.0
2,579,513	+		BPHYT_RS11365	0.53	-3.3
2,579,513	+				+0.0
2,579,514	-		BPHYT_RS11365	0.53	-1.9
2,579,517	-		BPHYT_RS11365	0.53	-0.1
2,579,517	-		BPHYT_RS11365	0.53	-0.4
2,579,517	-		BPHYT_RS11365	0.53	-0.4
2,579,517	-		BPHYT_RS11365	0.53	-0.5
2,579,612	-		BPHYT_RS11365	0.69	-1.8
2,579,668	-		BPHYT_RS11365	0.78	-1.5
2,579,987	+				+1.3