Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11340

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,575,048	+				-0.2
2,575,050	+				+0.8
2,575,244	+				+0.9
2,575,244	+				-0.8
2,575,245	-				-0.0
2,575,472	-		BPHYT_RS11335	0.37	+0.2
2,575,540	+		BPHYT_RS11335	0.64	-0.2
2,575,561	+		BPHYT_RS11335	0.72	-0.9
2,575,641	+				+1.4
2,575,642	-				+0.0
2,575,812	+				+0.1
2,575,812	+				+2.0
2,575,812	+				-1.4
2,575,813	-				+0.4
2,575,816	-				+1.0
2,575,816	-				-0.3
2,575,816	-				-0.1
2,575,910	-		BPHYT_RS11340	0.34	+0.8
2,575,996	+		BPHYT_RS11340	0.71	-0.6
2,576,157	+		BPHYT_RS11345	0.11	+0.5
2,576,247	-		BPHYT_RS11345	0.21	-1.0
2,576,247	-		BPHYT_RS11345	0.21	-0.3
2,576,250	+		BPHYT_RS11345	0.21	-1.3
2,576,251	-		BPHYT_RS11345	0.21	+0.8
2,576,251	-		BPHYT_RS11345	0.21	-0.6
2,576,265	-		BPHYT_RS11345	0.23	-0.3
2,576,403	+		BPHYT_RS11345	0.38	+1.2
2,576,403	+		BPHYT_RS11345	0.38	-0.8
2,576,403	+		BPHYT_RS11345	0.38	-0.3
2,576,404	-		BPHYT_RS11345	0.38	+0.4
2,576,606	+		BPHYT_RS11345	0.61	+0.6
2,576,653	-		BPHYT_RS11345	0.66	-0.5
2,576,773	-		BPHYT_RS11345	0.79	-1.3