Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11325

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,570,938	+				+0.0
2,570,939	-				+0.2
2,571,035	-				-1.1
2,571,388	+		BPHYT_RS11320	0.50	+0.3
2,571,389	-		BPHYT_RS11320	0.51	+0.1
2,571,389	-		BPHYT_RS11320	0.51	-1.3
2,571,391	+		BPHYT_RS11320	0.51	-1.8
2,571,392	-		BPHYT_RS11320	0.51	-0.3
2,571,392	-		BPHYT_RS11320	0.51	-1.8
2,571,419	+		BPHYT_RS11320	0.55	-0.4
2,571,575	-		BPHYT_RS11320	0.76	-0.3
2,571,841	+				-0.3
2,571,842	-				-0.4
2,572,170	-		BPHYT_RS11325	0.18	-2.9
2,572,170	-		BPHYT_RS11325	0.18	-3.4
2,572,530	-		BPHYT_RS11325	0.38	-3.1
2,572,763	+		BPHYT_RS11325	0.52	-1.6
2,573,148	-		BPHYT_RS11325	0.74	-2.1
2,573,304	-		BPHYT_RS11325	0.83	-3.7
2,573,304	-		BPHYT_RS11325	0.83	-2.1
2,573,309	+		BPHYT_RS11325	0.83	-2.6
2,573,310	-		BPHYT_RS11325	0.83	-2.3
2,573,415	-		BPHYT_RS11325	0.89	-2.3
2,573,415	-		BPHYT_RS11325	0.89	-2.8
2,574,067	+		BPHYT_RS11330	0.23	+0.8
2,574,068	-		BPHYT_RS11330	0.23	-0.1
2,574,403	+		BPHYT_RS11330	0.48	+1.3
2,574,431	-		BPHYT_RS11330	0.50	-1.6