Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11220

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,551,766	-		BPHYT_RS11215	0.61	+0.2
2,551,766	-		BPHYT_RS11215	0.61	-0.2
2,551,766	-		BPHYT_RS11215	0.61	+0.8
2,551,766	-		BPHYT_RS11215	0.61	+1.1
2,551,766	-		BPHYT_RS11215	0.61	+1.0
2,552,231	+				-0.4
2,552,232	-				+1.0
2,552,232	-				+0.6
2,552,232	-				+0.4
2,552,321	-				-0.4
2,552,549	+				-2.5
2,552,696	-				-1.1
2,552,696	-				+0.8
2,552,696	-				+0.5
2,552,696	-				+1.1
2,553,117	-		BPHYT_RS11220	0.44	-1.4
2,553,178	+		BPHYT_RS11220	0.50	-0.1
2,553,476	-		BPHYT_RS11220	0.81	+0.4
2,553,661	-				+0.4
2,553,661	-				+0.4
2,553,661	-				-0.8
2,553,661	-				-0.8
2,553,697	-				-1.3
2,553,703	-				-0.2
2,553,955	-				-0.9
2,554,100	+				+1.4
2,554,142	+		BPHYT_RS11225	0.13	-0.6
2,554,142	+		BPHYT_RS11225	0.13	+1.6
2,554,311	-		BPHYT_RS11225	0.30	-0.9
2,554,325	+		BPHYT_RS11225	0.31	+0.2
2,554,401	+		BPHYT_RS11225	0.39	-0.7
2,554,440	-		BPHYT_RS11225	0.43	-0.4