Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11210

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,548,790	-		BPHYT_RS11205	0.25	-2.0
2,548,790	-		BPHYT_RS11205	0.25	+0.9
2,548,792	+		BPHYT_RS11205	0.26	+1.7
2,548,793	-		BPHYT_RS11205	0.26	-2.0
2,549,037	-		BPHYT_RS11205	0.49	+0.0
2,549,247	+		BPHYT_RS11205	0.69	-0.7
2,549,252	-		BPHYT_RS11205	0.70	+1.5
2,549,252	-		BPHYT_RS11205	0.70	-0.2
2,549,298	+		BPHYT_RS11205	0.74	-1.7
2,549,350	-		BPHYT_RS11205	0.79	+0.2
2,549,433	+		BPHYT_RS11205	0.87	-0.7
2,549,434	-		BPHYT_RS11205	0.87	+0.2
2,549,434	-		BPHYT_RS11205	0.87	+0.3
2,549,434	-		BPHYT_RS11205	0.87	-1.6
2,549,434	-		BPHYT_RS11205	0.87	-0.1
2,549,434	-		BPHYT_RS11205	0.87	+0.5
2,549,547	-				+1.8
2,549,704	-				+1.1
2,549,704	-				-0.0
2,549,760	-				-0.6
2,549,764	-				+0.7
2,549,764	-				+0.3
2,550,249	-		BPHYT_RS11210	0.49	+0.2
2,550,275	+		BPHYT_RS11210	0.51	-2.2
2,550,276	-		BPHYT_RS11210	0.51	-0.1
2,550,575	+		BPHYT_RS11210	0.80	-2.1
2,550,575	+		BPHYT_RS11210	0.80	-1.0
2,550,647	+		BPHYT_RS11210	0.86	+0.7
2,550,918	-				-0.9
2,550,960	-		BPHYT_RS11215	0.11	+0.2
2,550,960	-		BPHYT_RS11215	0.11	+1.0
2,551,031	-		BPHYT_RS11215	0.15	+1.1
2,551,035	-		BPHYT_RS11215	0.16	-0.5
2,551,035	-		BPHYT_RS11215	0.16	+0.6
2,551,323	-		BPHYT_RS11215	0.34	+0.3
2,551,454	-		BPHYT_RS11215	0.42	+0.1
2,551,766	-		BPHYT_RS11215	0.61	+0.2
2,551,766	-		BPHYT_RS11215	0.61	-0.2
2,551,766	-		BPHYT_RS11215	0.61	+0.8
2,551,766	-		BPHYT_RS11215	0.61	+1.1
2,551,766	-		BPHYT_RS11215	0.61	+1.0