Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11180

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,538,170	+		BPHYT_RS11175	0.52	-3.4
2,538,365	+		BPHYT_RS11175	0.67	-1.0
2,538,365	+		BPHYT_RS11175	0.67	+0.3
2,538,462	-		BPHYT_RS11175	0.74	+0.6
2,538,687	-				+0.2
2,538,790	+				+0.0
2,538,819	+				-1.4
2,538,939	-				-0.2
2,538,939	-				+0.2
2,538,947	-				-1.5
2,538,994	+				+1.0
2,538,994	+				+0.4
2,538,995	-				-0.7
2,539,043	+				+1.0
2,539,043	+				-2.3
2,539,055	+				-1.6
2,539,058	-				+1.4
2,539,059	+				-1.6
2,539,110	+				-0.1
2,539,111	-				+1.5
2,539,280	-		BPHYT_RS11180	0.11	+0.2
2,539,731	+		BPHYT_RS11180	0.37	+1.6
2,539,732	-		BPHYT_RS11180	0.37	-1.2
2,539,812	+		BPHYT_RS11180	0.42	+1.0
2,539,951	+		BPHYT_RS11180	0.50	+0.0
2,539,952	-		BPHYT_RS11180	0.50	-2.3
2,540,064	+		BPHYT_RS11180	0.57	-1.6
2,540,170	-		BPHYT_RS11180	0.63	+0.0
2,540,419	-		BPHYT_RS11180	0.77	-2.0
2,540,509	-		BPHYT_RS11180	0.82	+0.0
2,540,509	-		BPHYT_RS11180	0.82	-0.6
2,540,966	+		BPHYT_RS11185	0.12	-1.1
2,541,007	+		BPHYT_RS11185	0.15	-1.3
2,541,008	-		BPHYT_RS11185	0.15	-3.4
2,541,092	+		BPHYT_RS11185	0.22	-0.2
2,541,257	+		BPHYT_RS11185	0.35	-1.9
2,541,257	+		BPHYT_RS11185	0.35	-1.9
2,541,258	-		BPHYT_RS11185	0.35	+1.3
2,541,381	-		BPHYT_RS11185	0.45	-2.1
2,541,708	-		BPHYT_RS11185	0.70	+0.3