Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11090

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,520,256	+		BPHYT_RS11085	0.29	+0.7
2,520,257	-		BPHYT_RS11085	0.29	-1.0
2,520,257	-		BPHYT_RS11085	0.29	+1.3
2,520,257	-		BPHYT_RS11085	0.29	+0.4
2,520,257	-		BPHYT_RS11085	0.29	-0.7
2,520,379	+		BPHYT_RS11085	0.38	+1.0
2,520,379	+		BPHYT_RS11085	0.38	+0.5
2,520,379	+		BPHYT_RS11085	0.38	+0.0
2,520,379	+		BPHYT_RS11085	0.38	-1.1
2,520,380	-		BPHYT_RS11085	0.38	-0.5
2,520,568	+		BPHYT_RS11085	0.52	+0.1
2,520,569	-		BPHYT_RS11085	0.52	-2.8
2,521,727	+				+0.8
2,521,970	+		BPHYT_RS11095	0.28	+0.3
2,522,033	+		BPHYT_RS11095	0.38	+0.5
2,522,439	+				+0.3
2,522,439	+				+0.0
2,522,687	-		BPHYT_RS11100	0.41	-1.2