Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11050

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,508,402	+		BPHYT_RS11045	0.47	+0.7
2,508,420	+		BPHYT_RS11045	0.48	-0.3
2,508,420	+		BPHYT_RS11045	0.48	+0.4
2,508,495	+		BPHYT_RS11045	0.55	-0.0
2,508,519	+		BPHYT_RS11045	0.57	+0.3
2,508,520	-		BPHYT_RS11045	0.57	+0.4
2,508,919	-				-0.0
2,508,993	-				-0.3
2,509,133	-				-0.0
2,509,133	-				-0.3
2,509,287	-				+1.0
2,510,037	+		BPHYT_RS11050	0.60	-0.5
2,510,854	+		BPHYT_RS11055	0.36	+0.4
2,510,974	+		BPHYT_RS11055	0.52	+0.1
2,510,974	+		BPHYT_RS11055	0.52	+0.5
2,510,975	-		BPHYT_RS11055	0.52	+1.3
2,511,205	+		BPHYT_RS11055	0.82	+0.4
2,511,205	+		BPHYT_RS11055	0.82	+0.5
2,511,248	+		BPHYT_RS11055	0.88	+4.1
2,511,288	+				+0.6
2,511,289	-				-1.3
2,511,289	-				-2.3
2,511,419	-				+1.0
2,511,425	-				+0.1
2,511,504	-				-0.6