Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11035

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11030 and BPHYT_RS11035 are separated by 33 nucleotidesBPHYT_RS11035 and BPHYT_RS11040 are separated by 179 nucleotides BPHYT_RS11030: BPHYT_RS11030 - transporter, at 2,504,777 to 2,505,775 _RS11030 BPHYT_RS11035: BPHYT_RS11035 - 4,5-dihydroxyphthalate decarboxylase, at 2,505,809 to 2,506,792 _RS11035 BPHYT_RS11040: BPHYT_RS11040 - GntR family transcriptional regulator, at 2,506,972 to 2,507,709 _RS11040 Position (kb) 2505 2506 2507Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2504.933 kb on + strand, within BPHYT_RS11030at 2506.582 kb on + strand, within BPHYT_RS11035at 2506.792 kb on + strandat 2507.430 kb on - strand, within BPHYT_RS11040at 2507.656 kb on - strandat 2507.656 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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2,504,933 + BPHYT_RS11030 0.16 -2.0
2,506,582 + BPHYT_RS11035 0.79 -0.6
2,506,792 + -0.4
2,507,430 - BPHYT_RS11040 0.62 -3.9
2,507,656 - -3.2
2,507,656 - -2.5

Or see this region's nucleotide sequence