Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10800

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,453,704	-				-1.6
2,454,521	-				+1.0
2,454,581	+				-0.1
2,454,743	-				+0.4
2,454,857	+				+0.0
2,454,866	+		BPHYT_RS10800	0.22	+0.6
2,454,866	+		BPHYT_RS10800	0.22	-0.6
2,454,867	-		BPHYT_RS10800	0.22	+0.1
2,454,867	-		BPHYT_RS10800	0.22	+2.2
2,455,183	-		BPHYT_RS10800	0.56	-1.3
2,455,586	+				+2.6
2,455,899	+		BPHYT_RS10805	0.23	-1.5
2,455,899	+		BPHYT_RS10805	0.23	-0.0
2,456,130	-		BPHYT_RS10805	0.40	-1.6
2,456,423	+		BPHYT_RS10805	0.61	+1.0
2,456,496	-		BPHYT_RS10805	0.66	+0.4