Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10190

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,318,744	+		BPHYT_RS10180	0.81	+0.4
2,319,182	+		BPHYT_RS10185	0.30	+1.2
2,319,182	+				+0.0
2,319,182	+		BPHYT_RS10185	0.30	-1.0
2,319,428	-		BPHYT_RS10185	0.80	+0.4
2,319,604	-				+0.7
2,319,627	+				-1.2
2,319,627	+				-0.2
2,319,784	-				-1.0
2,319,784	-				+1.4
2,319,844	-				-0.3
2,319,844	-				-0.2
2,319,885	+		BPHYT_RS10190	0.11	+1.6
2,320,308	+		BPHYT_RS10190	0.38	-0.5
2,320,308	+		BPHYT_RS10190	0.38	-0.2
2,320,309	-		BPHYT_RS10190	0.38	-0.7
2,320,377	+		BPHYT_RS10190	0.43	-2.2
2,320,398	+		BPHYT_RS10190	0.44	-0.6
2,320,398	+		BPHYT_RS10190	0.44	+0.8
2,320,428	+		BPHYT_RS10190	0.46	-1.3
2,320,755	+		BPHYT_RS10190	0.67	-1.4
2,320,941	+		BPHYT_RS10190	0.79	-1.5
2,320,942	-		BPHYT_RS10190	0.79	+0.4
2,321,237	+				-2.1
2,321,437	+				+1.0
2,321,438	-				+0.1
2,321,467	-				-2.6
2,321,467	-				+0.3
2,322,023	+		BPHYT_RS10195	0.50	+0.6
2,322,023	+		BPHYT_RS10195	0.50	-1.0