Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10000

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,276,868	-		BPHYT_RS09995	0.35	-0.1
2,276,976	-		BPHYT_RS09995	0.43	+0.0
2,276,976	-		BPHYT_RS09995	0.43	+1.4
2,277,293	+		BPHYT_RS09995	0.67	+1.1
2,277,302	-		BPHYT_RS09995	0.67	+0.3
2,277,538	-		BPHYT_RS09995	0.85	+1.6
2,277,538	-		BPHYT_RS09995	0.85	-0.4
2,278,013	+				-1.7
2,278,584	+		BPHYT_RS10000	0.39	+0.7
2,278,586	+		BPHYT_RS10000	0.39	+0.7
2,278,592	+		BPHYT_RS10000	0.39	+2.0
2,278,739	+		BPHYT_RS10000	0.47	-0.9
2,278,739	+		BPHYT_RS10000	0.47	-0.6
2,278,740	-		BPHYT_RS10000	0.47	+0.0
2,278,966	+		BPHYT_RS10000	0.59	+1.1
2,279,061	+		BPHYT_RS10000	0.64	+0.8
2,279,504	+		BPHYT_RS10000	0.88	-0.3
2,279,504	+		BPHYT_RS10000	0.88	-0.6
2,279,504	+		BPHYT_RS10000	0.88	-1.1
2,279,505	-		BPHYT_RS10000	0.88	-0.0
2,279,505	-		BPHYT_RS10000	0.88	+0.2
2,280,111	+		BPHYT_RS10005	0.48	-2.1
2,280,111	+		BPHYT_RS10005	0.48	-0.3
2,280,363	-				-0.5
2,280,369	-				+0.9