Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09790

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,223,467	+		BPHYT_RS09785	0.83	-0.7
2,223,468	-		BPHYT_RS09785	0.83	-0.8
2,223,836	+				-0.1
2,223,836	+				+0.4
2,223,837	-				-0.1
2,223,891	-				-0.9
2,223,985	-				-0.5
2,224,091	+				-0.8
2,224,091	+				+0.1
2,224,091	+				-1.1
2,224,092	-				-0.6
2,224,116	+				+1.3
2,224,117	-				-1.5
2,224,205	+		BPHYT_RS09790	0.16	-4.2
2,224,295	+		BPHYT_RS09790	0.24	+0.7
2,224,340	+		BPHYT_RS09790	0.27	-0.3
2,224,520	+		BPHYT_RS09790	0.42	-1.1
2,224,520	+		BPHYT_RS09790	0.42	-3.5
2,224,521	-		BPHYT_RS09790	0.42	+0.2
2,224,859	+		BPHYT_RS09790	0.70	+0.6
2,224,970	+		BPHYT_RS09790	0.79	+3.6
2,225,060	+		BPHYT_RS09790	0.87	-1.1
2,225,061	-		BPHYT_RS09790	0.87	-0.1
2,225,312	+				-0.3
2,225,313	-				-0.5
2,225,313	-				-0.1
2,225,316	-				-0.5
2,225,622	-				-0.4
2,225,832	-				+0.8