Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09385

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,124,667	-		BPHYT_RS09375	0.58	-2.4
2,124,667	-		BPHYT_RS09375	0.58	-1.6
2,124,743	+		BPHYT_RS09375	0.63	-3.0
2,124,761	+		BPHYT_RS09375	0.64	-1.8
2,124,959	+		BPHYT_RS09375	0.79	-1.8
2,124,959	+		BPHYT_RS09375	0.79	-2.4
2,124,960	-		BPHYT_RS09375	0.79	-4.7
2,125,115	+		BPHYT_RS09375	0.90	-2.2
2,126,594	-		BPHYT_RS09385	0.84	-1.0
2,126,667	+				-3.2
2,126,908	-		BPHYT_RS09390	0.17	+2.0
2,126,908	-		BPHYT_RS09390	0.17	-3.2
2,126,908	-		BPHYT_RS09390	0.17	-0.7
2,127,523	+				+0.1
2,127,523	+				-0.6
2,127,537	+				+0.8
2,127,718	+		BPHYT_RS09395	0.15	-0.9