Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09365

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,121,291	-				-0.5
2,121,305	-				-1.2
2,121,320	+				+1.5
2,121,321	-				-1.1
2,121,322	+				-0.2
2,121,323	-				+1.1
2,121,324	-				-1.5
2,121,325	+				+0.1
2,121,647	+		BPHYT_RS09360	0.25	-1.2
2,121,647	+		BPHYT_RS09360	0.25	+0.5
2,121,648	-		BPHYT_RS09360	0.25	+0.9
2,121,716	+		BPHYT_RS09360	0.35	+0.1
2,121,717	-		BPHYT_RS09360	0.35	+0.6
2,121,767	+		BPHYT_RS09360	0.42	+1.5
2,121,903	+		BPHYT_RS09360	0.61	-1.1
2,121,904	-		BPHYT_RS09360	0.61	-0.7
2,121,929	-		BPHYT_RS09360	0.65	-0.4
2,122,104	+		BPHYT_RS09360	0.90	-0.1
2,122,142	-				-0.7
2,122,547	+		BPHYT_RS09365	0.81	+0.8
2,122,547	+		BPHYT_RS09365	0.81	+1.2
2,122,920	-		BPHYT_RS09370	0.20	-1.5
2,123,507	+		BPHYT_RS09370	0.70	-0.7
2,123,511	+		BPHYT_RS09370	0.70	+1.1