Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08955

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
2,026,251	-		BPHYT_RS08950	0.36	-1.7
2,026,251	-		BPHYT_RS08950	0.36	-4.7
2,026,251	-		BPHYT_RS08950	0.36	-1.5
2,026,252	+				-1.7
2,026,271	-		BPHYT_RS08950	0.37	-2.3
2,026,367	+		BPHYT_RS08950	0.45	-0.3
2,026,442	+		BPHYT_RS08950	0.51	-1.2
2,026,457	+		BPHYT_RS08950	0.52	-1.2
2,026,619	+		BPHYT_RS08950	0.65	+1.3
2,026,770	-		BPHYT_RS08950	0.77	-0.8
2,026,826	+		BPHYT_RS08950	0.82	-0.8
2,026,826	+		BPHYT_RS08950	0.82	+1.5
2,026,826	+		BPHYT_RS08950	0.82	+0.3
2,026,827	-		BPHYT_RS08950	0.82	-3.3
2,026,827	-		BPHYT_RS08950	0.82	-2.2
2,026,827	-		BPHYT_RS08950	0.82	-2.4
2,026,828	+		BPHYT_RS08950	0.82	-0.8
2,026,828	+		BPHYT_RS08950	0.82	-0.2
2,026,828	+		BPHYT_RS08950	0.82	+0.4
2,026,828	+		BPHYT_RS08950	0.82	+0.3
2,026,896	+		BPHYT_RS08950	0.87	+0.9
2,027,064	+				-0.8
2,027,072	-				-4.6
2,027,127	+				+0.2
2,027,135	+				+0.0
2,027,216	+				-4.1
2,027,654	-		BPHYT_RS08955	0.37	-2.7
2,027,834	-		BPHYT_RS08955	0.51	-3.1
2,027,875	+		BPHYT_RS08955	0.54	-0.9
2,028,050	-		BPHYT_RS08955	0.67	-1.9
2,028,126	+		BPHYT_RS08955	0.73	-0.5
2,028,226	+		BPHYT_RS08955	0.80	-4.9
2,028,227	-		BPHYT_RS08955	0.80	-2.8
2,028,227	-		BPHYT_RS08955	0.80	-0.9
2,028,484	+				+0.4
2,028,485	-				-1.5
2,028,485	-				-0.5
2,028,494	+				+0.3
2,028,494	+				-1.0
2,028,588	+				-0.5
2,028,750	+		BPHYT_RS08960	0.18	-0.9
2,029,176	+		BPHYT_RS08960	0.47	+0.1
2,029,450	-		BPHYT_RS08960	0.66	+1.1