Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08665

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,972,829	+				-0.5
1,972,947	-				-1.7
1,972,947	-				+0.2
1,973,153	+		BPHYT_RS08665	0.88	-3.4
1,973,353	+		BPHYT_RS08670	0.19	-0.5
1,973,354	-		BPHYT_RS08670	0.19	+0.6
1,973,455	-		BPHYT_RS08670	0.56	+0.8
1,973,465	+		BPHYT_RS08670	0.60	-1.8
1,973,465	+		BPHYT_RS08670	0.60	-0.4
1,973,466	-		BPHYT_RS08670	0.60	-0.1
1,973,715	+		BPHYT_RS08675	0.22	-0.5
1,973,716	-		BPHYT_RS08675	0.23	+0.5
1,973,864	+		BPHYT_RS08675	0.63	+0.2
1,973,865	-		BPHYT_RS08675	0.63	-1.0
1,973,865	-		BPHYT_RS08675	0.63	+0.6
1,973,890	+		BPHYT_RS08675	0.70	+0.6
1,973,896	+		BPHYT_RS08675	0.72	+0.4
1,973,897	-		BPHYT_RS08675	0.72	+0.5
1,974,068	+				-0.9