Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08405

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08400 and BPHYT_RS08405 are separated by 497 nucleotidesBPHYT_RS08405 and BPHYT_RS08410 are separated by 156 nucleotides BPHYT_RS08400: BPHYT_RS08400 - hypothetical protein, at 1,926,152 to 1,926,703 _RS08400 BPHYT_RS08405: BPHYT_RS08405 - hypothetical protein, at 1,927,201 to 1,927,551 _RS08405 BPHYT_RS08410: BPHYT_RS08410 - dehydrogenase, at 1,927,708 to 1,928,649 _RS08410 Position (kb) 1927 1928Strain fitness (log2 ratio) -1 0 1 2at 1926.404 kb on - strand, within BPHYT_RS08400at 1926.431 kb on - strand, within BPHYT_RS08400at 1926.483 kb on + strand, within BPHYT_RS08400at 1926.538 kb on + strand, within BPHYT_RS08400at 1926.752 kb on - strandat 1927.046 kb on + strandat 1927.148 kb on + strandat 1927.149 kb on - strandat 1927.488 kb on + strand, within BPHYT_RS08405at 1928.065 kb on - strand, within BPHYT_RS08410

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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1,926,404 - BPHYT_RS08400 0.46 +0.7
1,926,431 - BPHYT_RS08400 0.51 +0.5
1,926,483 + BPHYT_RS08400 0.60 +0.4
1,926,538 + BPHYT_RS08400 0.70 -1.6
1,926,752 - +1.2
1,927,046 + +0.5
1,927,148 + +2.2
1,927,149 - -0.6
1,927,488 + BPHYT_RS08405 0.82 +0.9
1,928,065 - BPHYT_RS08410 0.38 +0.1

Or see this region's nucleotide sequence