Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08360

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08355 and BPHYT_RS08360 are separated by 337 nucleotidesBPHYT_RS08360 and BPHYT_RS08365 are separated by 326 nucleotides BPHYT_RS08355: BPHYT_RS08355 - hypothetical protein, at 1,914,561 to 1,914,983 _RS08355 BPHYT_RS08360: BPHYT_RS08360 - LysR family transcriptional regulator, at 1,915,321 to 1,916,211 _RS08360 BPHYT_RS08365: BPHYT_RS08365 - 3-oxoacyl-ACP reductase, at 1,916,538 to 1,917,248 _RS08365 Position (kb) 1915 1916 1917Strain fitness (log2 ratio) -1 0 1 2at 1914.793 kb on - strand, within BPHYT_RS08355at 1915.147 kb on - strandat 1915.290 kb on + strandat 1915.298 kb on + strandat 1915.333 kb on + strandat 1916.085 kb on + strand, within BPHYT_RS08360at 1916.645 kb on + strand, within BPHYT_RS08365at 1917.161 kb on - strand, within BPHYT_RS08365

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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1,914,793 - BPHYT_RS08355 0.55 -0.9
1,915,147 - +1.0
1,915,290 + +2.0
1,915,298 + -0.4
1,915,333 + +0.2
1,916,085 + BPHYT_RS08360 0.86 -1.3
1,916,645 + BPHYT_RS08365 0.15 +2.6
1,917,161 - BPHYT_RS08365 0.88 -0.6

Or see this region's nucleotide sequence