Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08185

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,871,019	-		BPHYT_RS08180	0.59	+1.4
1,871,525	+				+0.3
1,871,671	+				-0.3
1,871,671	+				-0.3
1,871,864	+		BPHYT_RS08185	0.24	+0.8
1,871,864	+		BPHYT_RS08185	0.24	+1.0
1,871,865	-		BPHYT_RS08185	0.24	+0.2
1,872,128	-		BPHYT_RS08185	0.42	+0.5
1,872,382	+		BPHYT_RS08185	0.60	+0.1
1,872,612	+		BPHYT_RS08185	0.77	+0.7
1,873,845	-		BPHYT_RS08190	0.89	-0.6
1,873,894	-				+2.6
1,873,927	-				-0.6