Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07910

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,799,704	-				+2.1
1,800,185	+				-1.2
1,800,185	+				-0.6
1,800,185	+				-0.5
1,800,185	+				-1.4
1,800,185	+				+0.5
1,800,186	-				+0.9
1,800,186	-				-0.9
1,800,186	-				-1.5
1,800,186	-				-1.9
1,800,186	-				+0.1
1,800,186	-				+0.4
1,800,186	-				-1.4
1,800,610	+				-2.4
1,800,610	+				-0.4
1,800,895	+		BPHYT_RS07910	0.26	-2.5
1,800,896	-		BPHYT_RS07910	0.26	-1.1
1,800,896	-		BPHYT_RS07910	0.26	-2.4
1,800,896	-		BPHYT_RS07910	0.26	-0.7
1,800,898	-		BPHYT_RS07910	0.26	-1.4
1,800,898	-		BPHYT_RS07910	0.26	+0.1
1,800,898	-		BPHYT_RS07910	0.26	-1.7
1,801,393	-		BPHYT_RS07910	0.68	+0.3
1,801,525	-		BPHYT_RS07910	0.79	-0.8
1,801,731	-				-0.4
1,801,949	+				+2.2
1,801,950	-				-2.1
1,801,950	-				+0.3
1,801,950	-				-2.9
1,802,039	+				+0.3
1,802,039	+				-0.5
1,802,046	+				+1.5
1,802,046	+				+0.6
1,802,123	+				+0.6
1,802,123	+				-0.1
1,802,123	+				+0.8
1,802,124	-				-0.7