Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07635

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,737,330	+		BPHYT_RS07630	0.40	-1.2
1,737,352	+		BPHYT_RS07630	0.42	+0.8
1,737,353	-		BPHYT_RS07630	0.42	+0.6
1,737,355	-		BPHYT_RS07630	0.42	+0.1
1,737,554	-		BPHYT_RS07630	0.62	-0.9
1,737,748	-		BPHYT_RS07630	0.82	-0.7
1,738,163	-				+0.4
1,738,163	-				+0.9
1,738,163	-				-1.1
1,738,380	-		BPHYT_RS07635	0.12	-0.8
1,738,555	+		BPHYT_RS07635	0.28	-0.5
1,738,556	-		BPHYT_RS07635	0.29	+0.4
1,739,196	+		BPHYT_RS07635	0.88	+0.4
1,739,196	+		BPHYT_RS07635	0.88	-1.8
1,739,197	-		BPHYT_RS07635	0.88	-0.5
1,739,820	-		BPHYT_RS07640	0.56	+0.2
1,739,979	-		BPHYT_RS07640	0.76	-0.9