Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07525 and BPHYT_RS07530 overlap by 94 nucleotides BPHYT_RS07530 and BPHYT_RS07535 are separated by 47 nucleotides BPHYT_RS07535 and BPHYT_RS07540 are separated by 100 nucleotides BPHYT_RS07540 and BPHYT_RS07545 are separated by 192 nucleotides
BPHYT_RS07525: BPHYT_RS07525 - ArsR family transcriptional regulator, at 1,712,876 to 1,713,301
_RS07525
BPHYT_RS07530: BPHYT_RS07530 - ATPase, at 1,713,208 to 1,713,636
_RS07530
BPHYT_RS07535: BPHYT_RS07535 - hypothetical protein, at 1,713,684 to 1,714,421
_RS07535
BPHYT_RS07540: BPHYT_RS07540 - hypothetical protein, at 1,714,522 to 1,714,704
_RS07540
BPHYT_RS07545: BPHYT_RS07545 - epimerase, at 1,714,897 to 1,715,820
_RS07545
Position (kb) 1713
1714
1715 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1713.745 kb on + strand at 1713.834 kb on - strand, within BPHYT_RS07535 at 1714.006 kb on + strand, within BPHYT_RS07535 at 1714.007 kb on - strand, within BPHYT_RS07535 at 1714.169 kb on + strand, within BPHYT_RS07535 at 1714.215 kb on - strand, within BPHYT_RS07535 at 1714.249 kb on - strand, within BPHYT_RS07535 at 1714.622 kb on + strand, within BPHYT_RS07540 at 1714.914 kb on + strand at 1714.914 kb on + strand at 1714.914 kb on + strand at 1714.915 kb on - strand at 1715.016 kb on + strand, within BPHYT_RS07545 at 1715.166 kb on - strand, within BPHYT_RS07545 at 1715.228 kb on + strand, within BPHYT_RS07545 at 1715.228 kb on + strand, within BPHYT_RS07545 at 1715.229 kb on - strand, within BPHYT_RS07545 at 1715.285 kb on - strand, within BPHYT_RS07545 at 1715.408 kb on - strand, within BPHYT_RS07545 at 1715.408 kb on - strand, within BPHYT_RS07545
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 1,713,745 + +0.0 1,713,834 - BPHYT_RS07535 0.20 +2.0 1,714,006 + BPHYT_RS07535 0.44 -1.3 1,714,007 - BPHYT_RS07535 0.44 +0.2 1,714,169 + BPHYT_RS07535 0.66 -1.2 1,714,215 - BPHYT_RS07535 0.72 -2.4 1,714,249 - BPHYT_RS07535 0.77 -0.1 1,714,622 + BPHYT_RS07540 0.55 +0.1 1,714,914 + +0.2 1,714,914 + +1.0 1,714,914 + +0.1 1,714,915 - -0.4 1,715,016 + BPHYT_RS07545 0.13 +0.4 1,715,166 - BPHYT_RS07545 0.29 +0.0 1,715,228 + BPHYT_RS07545 0.36 -0.2 1,715,228 + BPHYT_RS07545 0.36 +0.7 1,715,229 - BPHYT_RS07545 0.36 -1.3 1,715,285 - BPHYT_RS07545 0.42 +0.3 1,715,408 - BPHYT_RS07545 0.55 -0.0 1,715,408 - BPHYT_RS07545 0.55 -2.8
Or see this region's nucleotide sequence