Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07445

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07440 and BPHYT_RS07445 are separated by 191 nucleotidesBPHYT_RS07445 and BPHYT_RS07450 are separated by 282 nucleotides BPHYT_RS07440: BPHYT_RS07440 - LysR family transcriptional regulator, at 1,691,169 to 1,692,062 _RS07440 BPHYT_RS07445: BPHYT_RS07445 - carbonate dehydratase, at 1,692,254 to 1,692,826 _RS07445 BPHYT_RS07450: BPHYT_RS07450 - histidine kinase, at 1,693,109 to 1,694,524 _RS07450 Position (kb) 1692 1693Strain fitness (log2 ratio) -1 0 1at 1691.766 kb on - strand, within BPHYT_RS07440at 1692.518 kb on + strand, within BPHYT_RS07445at 1692.875 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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1,691,766 - BPHYT_RS07440 0.67 -1.0
1,692,518 + BPHYT_RS07445 0.46 +1.0
1,692,875 + +1.6

Or see this region's nucleotide sequence