Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06915

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,566,251	+				+0.0
1,566,251	+				-3.2
1,566,263	-				+1.0
1,566,325	-				+1.7
1,566,357	-				+1.0
1,566,614	+		BPHYT_RS06910	0.23	+0.7
1,566,614	+		BPHYT_RS06910	0.23	-0.8
1,566,762	-		BPHYT_RS06910	0.50	-0.7
1,566,875	+		BPHYT_RS06910	0.71	-0.6
1,566,875	+		BPHYT_RS06910	0.71	-0.5
1,566,876	-		BPHYT_RS06910	0.71	-1.6
1,566,989	+				-0.4
1,567,059	-				-1.4
1,567,345	+		BPHYT_RS06915	0.44	+0.6
1,567,345	+		BPHYT_RS06915	0.44	-0.5
1,567,529	+				+1.3
1,567,530	-				-1.3
1,567,614	+				-0.6
1,567,615	-				-1.8
1,567,716	-		BPHYT_RS06920	0.14	+1.4
1,567,968	+		BPHYT_RS06920	0.43	-0.0
1,567,968	+		BPHYT_RS06920	0.43	+1.6
1,568,015	+		BPHYT_RS06920	0.49	-0.1
1,568,105	+		BPHYT_RS06920	0.60	-2.0
1,568,105	+		BPHYT_RS06920	0.60	-0.6
1,568,105	+		BPHYT_RS06920	0.60	-1.2
1,568,106	-		BPHYT_RS06920	0.60	+0.6
1,568,107	+		BPHYT_RS06920	0.60	+0.6
1,568,108	-		BPHYT_RS06920	0.60	-2.0
1,568,384	+				+2.0
1,568,448	+				-1.5