Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06905

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,563,093	-		BPHYT_RS06900	0.57	-1.6
1,563,093	-		BPHYT_RS06900	0.57	+1.0
1,563,093	-		BPHYT_RS06900	0.57	-2.3
1,563,093	-		BPHYT_RS06900	0.57	-1.6
1,563,093	-		BPHYT_RS06900	0.57	-4.5
1,563,093	-		BPHYT_RS06900	0.57	-3.8
1,563,149	+		BPHYT_RS06900	0.62	-1.0
1,563,378	-		BPHYT_RS06900	0.81	-2.9
1,563,378	-		BPHYT_RS06900	0.81	+0.0
1,564,020	+				+0.7
1,564,025	+				-2.0
1,564,026	-				+0.3
1,564,026	-				+0.0
1,564,144	-				+0.0
1,564,144	-				-3.1
1,564,145	+				-4.7
1,564,277	-		BPHYT_RS06905	0.10	-3.1
1,564,386	-		BPHYT_RS06905	0.16	-3.0
1,564,398	-		BPHYT_RS06905	0.16	-3.4
1,564,424	+		BPHYT_RS06905	0.17	-1.3
1,564,425	-		BPHYT_RS06905	0.17	-0.6
1,564,559	+		BPHYT_RS06905	0.24	-1.8
1,564,664	+		BPHYT_RS06905	0.29	-1.1
1,564,665	-		BPHYT_RS06905	0.29	-1.7
1,564,726	+		BPHYT_RS06905	0.32	-1.3
1,564,800	+		BPHYT_RS06905	0.35	-0.3
1,564,946	+		BPHYT_RS06905	0.42	+0.0
1,565,049	-		BPHYT_RS06905	0.47	-1.5
1,565,174	+		BPHYT_RS06905	0.53	-2.0
1,565,174	+		BPHYT_RS06905	0.53	-2.0
1,565,174	+		BPHYT_RS06905	0.53	-3.0
1,565,213	+		BPHYT_RS06905	0.55	-2.7
1,565,543	+		BPHYT_RS06905	0.71	-3.6
1,565,777	+		BPHYT_RS06905	0.82	-3.7
1,565,778	-		BPHYT_RS06905	0.82	-2.7
1,565,921	+		BPHYT_RS06905	0.89	-5.9
1,565,922	-		BPHYT_RS06905	0.89	-3.9
1,566,251	+				+0.0
1,566,251	+				-3.2
1,566,263	-				+1.0
1,566,325	-				+1.7
1,566,357	-				+1.0
1,566,614	+		BPHYT_RS06910	0.23	+0.7
1,566,614	+		BPHYT_RS06910	0.23	-0.8
1,566,762	-		BPHYT_RS06910	0.50	-0.7
1,566,875	+		BPHYT_RS06910	0.71	-0.6
1,566,875	+		BPHYT_RS06910	0.71	-0.5
1,566,876	-		BPHYT_RS06910	0.71	-1.6
1,566,989	+				-0.4
1,567,059	-				-1.4