Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06535

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,483,133	-		BPHYT_RS06525	0.75	+0.4
1,483,174	+		BPHYT_RS06525	0.82	-1.2
1,483,175	-		BPHYT_RS06525	0.83	-1.3
1,483,210	-		BPHYT_RS06525	0.89	-2.5
1,483,575	-		BPHYT_RS06530	0.39	-3.6
1,483,629	-		BPHYT_RS06530	0.46	-1.0
1,483,967	+				-1.3
1,484,034	-				-3.7
1,484,077	-				-3.6
1,484,101	-		BPHYT_RS06535	0.10	-4.6
1,484,126	+		BPHYT_RS06535	0.16	-3.4
1,484,127	-		BPHYT_RS06535	0.16	-4.9
1,484,127	-		BPHYT_RS06535	0.16	-3.6
1,484,181	+		BPHYT_RS06535	0.29	-0.4
1,484,181	+		BPHYT_RS06535	0.29	-4.4
1,484,485	+				+0.6
1,484,485	+				-1.5
1,484,486	-				-0.9
1,484,601	+		BPHYT_RS06540	0.21	-0.1
1,484,602	-		BPHYT_RS06540	0.21	+0.4
1,484,602	-		BPHYT_RS06540	0.21	-0.6
1,484,811	+		BPHYT_RS06540	0.58	-0.1
1,484,811	+		BPHYT_RS06540	0.58	-1.2
1,484,811	+		BPHYT_RS06540	0.58	-1.4
1,484,811	+		BPHYT_RS06540	0.58	-1.0
1,484,838	-		BPHYT_RS06540	0.63	-0.3
1,484,862	+		BPHYT_RS06540	0.67	+0.0
1,484,862	+		BPHYT_RS06540	0.67	+0.3
1,484,863	-		BPHYT_RS06540	0.68	-1.0
1,484,863	-		BPHYT_RS06540	0.68	+0.1
1,484,975	+		BPHYT_RS06540	0.87	-3.1
1,485,077	+				+2.6
1,485,113	+				-3.2
1,485,162	+				-1.0
1,485,163	-				+0.0
1,485,163	-				+0.9
1,485,224	-				-0.7
1,485,224	-				-1.4
1,485,253	+				-0.9
1,485,274	+				-0.9
1,485,274	+				+1.0
1,485,275	-				-3.8
1,485,275	-				-3.1
1,485,412	+				-4.3